Software at the Workshop

Software from the Course

The links to software from this page were functional as of August, 2008. If the links do not work, or do not lead to the expected software, other means of finding the software, such as a web search, should be used.

• Mx from Mike Neale http://views.vcu.edu/mx/.

  The Windows version is available from http://www.vipbg.vcu.edu/mxgui/index.html

  Binaries for various Unix and Unix-like systems, including Mac OS X are in available on the Mx website.

• R from The R Project for Statistical Computing http://www.r-project.org/
• Merlin from Gonçalo Abecasis http://www.sph.umich.edu/csg/abecasis/Merlin/index.html
• LAMP from Gonçalo Abecasis http://www.sph.umich.edu/csg/abecasis/LAMP/index.html
• QTDT from Gonçalo Abecasis http://www.sph.umich.edu/csg/abecasis/QTDT/index.html
• PedStats from Gonçalo Abecasis http://www.sph.umich.edu/csg/abecasis/PedStats/index.html
• GRR from Gonçalo Abecasis http://www.sph.umich.edu/csg/abecasis/GRR/index.html
• CaTS from Gonçalo Abecasis http://www.sph.umich.edu/csg/abecasis/CaTS/index.html
• Haploview from Jeffrey Barrett and Mark Daly's lab http://www.broad.mit.edu/mpg/haploview/index.php

  Haploview requires a Java Runtime Environment (JRE) to run. One is available from http://www.java.com/.

• PLINK from Shaun Purcell http://pngu.mgh.harvard.edu/~purcell/plink/
• gPLINK from Shaun Purcell http://pngu.mgh.harvard.edu/~purcell/plink/gplink.shtml

  gPLINK requires a Java Runtime Environment (JRE) to run. One is available from http://www.java.com/.

• OpenBugs from Andrew Thomas, Bob O Hara, Uwe Ligges, and Sibylle Sturtz. http://mathstat.helsinki.fi/openbugs/