Data from David Shooks RI experiments
notes: Variable Key for files in the directory
qtl.archive; from
Anne Brooks initial QTL mapping experiments, surv on liquid, fert on
solid))
Any file prefaced with "ri" does not include N2
and BERGERAC data.
file.name
var1 var2
.... varN
- bag.doc data: strain replicate %bag (%bag = bag / (bag + dead); does not include lost or killed) (includes N2 and BERG data)
- fert.raw: strain plate day1-2 day3-4 day5-6 replicate (includes N2 and BERG data)
- markers.anova: markers = STP124 HP4 TCBN2 STP100 STP196 STP101 STP50 STP36 STP98
MAP1 STP19 MGP21 STP127 STP13 STP51 STP44 SP4 STP5 STP35 STP3 STP192 STP23 BP1
STP6 STP18 STP108 STP105 STP41 STP40 STP156 STP33 STP103 STP129 STP61 STP72
STP2 (STP50 and STP44 not used in my analysis, but included here)
- markers.regress: strain set (markers, as above)
(in this file, set is coded such that (.anova = .regress) 1 = 1, 2 = -1;
the markers are coded such that 1 = 1, 0 = -1; this is useful for the
regression analysis I did, especially for interactions between set and
markers)
-
ribag.means: strain mean (mean for both replicates, as are other files of this
format)
- rifert.rep: strain replicate1-mean replicate2-mean
- rimaxage.means: strain mean (mean = mean of two replicate "maximum ages")
- rimaxfert.rep: replicate1, replicate2 (rep1,2 = maximum fertility of that replicate)
- risurv.dat: strain replicate time_of_death ts-fertility_phenotype
(time of death = midpoint between last alive and dead; ts-fert; 0 = no prog, 1 = few prog, 2 = many prog. This file has one line/worm, so can be used for survival analysis of whole population)
- surv.rare: strain replicate individual result ts_fert_pheno (individual: individual worm number; not especially relevant to anything result: 1 = dead, 2 = censored (lost, killed, bagged); ts as for risurv.dat;
This file is included as it has the censored data; it is a super-set of
the data contained in risurv.dat, so perhaps that file is redundant)