QTDT - Quantitative TDT 2.2.1
(c) 1998-2001 Goncalo Abecasis (goncalo@well.ox.ac.uk)

This program implements tests described by
Abecasis et al, Am J Hum Genet 66:279-292 (2000)
Abecasis et al, Eur J Hum Genet 8:545-551 (2000)
and others

The following parameters are in effect:
           QTDT Data File :          keavney.dat (-dname)
       QTDT Pedigree File :          keavney.ped (-pname)
     QTDT IBD Status File :           merlin.ibd (-iname)
       Missing Value Code :              -99.999 (-xname)
               Covariates :       USER SPECIFIED (-c{p|s|u|-|})
        Association Model :                 NONE (-a[a|d|f|m|o|p|r|t|w|-])
     Full Model Variances :           NON SHARED (-v{e|c|g|n|t|a|d|-|})
                          &            POLYGENIC
                          &             ADDITIVE
     Null Model Variances :           NON SHARED (-w{e|c|g|n|t|a|d|-|})
                          &            POLYGENIC
 Parent of Origin Effects :                 NONE (-o[f|t|m|p|-])
 Monte-Carlo Permutations :                    0 (-m9999)
        Numeric Minimizer :      NELDER AND MEAD (-n[n|p])
     Transmission Scoring :        FULL PEDIGREE (-t[n|p])

Additional Options
 --dominance, --snp, --multi-allelic, --references,
 --exclude-founder-phenotypes

Online documentation http://www.well.ox.ac.uk/asthma/QTDT
Comments, bugs: goncalo@well.ox.ac.uk

The following models will be evaluated...
  NULL MODEL
     Means = Mu
 Variances = Ve + Vg

  FULL MODEL
     Means = Mu
 Variances = Ve + Vg + Va

Testing trait:                    Angiotensin
=============================================

Testing marker:                       t-5491c
---------------------------------------------

 Allele   df(0)  LnLk(0)   df(V)  LnLk(V)   ChiSq       p
    1 :     398   540.73     397   523.96   33.54   7e-09  (401 probands)

Testing marker:                       a-5466c
---------------------------------------------

 Allele   df(0)  LnLk(0)   df(V)  LnLk(V)   ChiSq       p
    1 :     398   540.73     397   523.96   33.54   7e-09  (401 probands)

Testing marker:                       t-3892c
---------------------------------------------

 Allele   df(0)  LnLk(0)   df(V)  LnLk(V)   ChiSq       p
    1 :     398   540.73     397   523.96   33.53   7e-09  (401 probands)

Testing marker:                        a-240t
---------------------------------------------

 Allele   df(0)  LnLk(0)   df(V)  LnLk(V)   ChiSq       p
    1 :     398   540.73     397   523.97   33.52   7e-09  (401 probands)

Testing marker:                         t-93c
---------------------------------------------

 Allele   df(0)  LnLk(0)   df(V)  LnLk(V)   ChiSq       p
    1 :     398   540.73     397   523.97   33.52   7e-09  (401 probands)

Testing marker:                       t-1237c
---------------------------------------------

 Allele   df(0)  LnLk(0)   df(V)  LnLk(V)   ChiSq       p
    1 :     398   540.73     397   523.99   33.49   7e-09  (401 probands)

Testing marker:                        g2215a
---------------------------------------------

 Allele   df(0)  LnLk(0)   df(V)  LnLk(V)   ChiSq       p
    1 :     398   540.73     397   523.99   33.49   7e-09  (401 probands)

Testing marker:                           i/d
---------------------------------------------

 Allele   df(0)  LnLk(0)   df(V)  LnLk(V)   ChiSq       p
    1 :     398   540.73     397   523.99   33.49   7e-09  (401 probands)

Testing marker:                        g2350a
---------------------------------------------

 Allele   df(0)  LnLk(0)   df(V)  LnLk(V)   ChiSq       p
    1 :     398   540.73     397   523.99   33.48   7e-09  (401 probands)

Testing marker:                        4656ct
---------------------------------------------

 Allele   df(0)  LnLk(0)   df(V)  LnLk(V)   ChiSq       p
    1 :     398   540.73     397   523.81   33.84   6e-09  (401 probands)