Basic Analysis	

		QTL1	9.86	0.0017
		QTL2	0.62	-----

Add siblings

    Total test
		QTL1    15.38   0.0000
		QTL2	2.57    -----

    Within family test
		QTL1	0.94    -----
		QTL2    0.81    -----

    Test for stratification
	        QTL1    4.15    0.0416
		QTL2    0.21    -----


Add posterior probabilities as simple covariates

    Total test (K=3, 3 covariates added)
	       QTL1	0.27    -----
	       QTL2	0.09    -----
	       

L-ASSOC tests

	Standard test
	       QTL1	9.846	0.002
	       QTL2	0.617	0.432

	Allow for class-differences in allele frequency
	       QTL1 0.297   0.586
	       QTL2	0.093	0.760

	Test for stratification
	       QTL1	55.007  0.000
	       QTL2	1.861	0.394

        Allow for class-differences and class X QTL interaction
	       QTL1     0.323   0.956
	       QTL2     24.090  0.000



Genomic control 
	Median LRT = 6.867
	Controlled QTL1 = 9.86 / (6.867/0.456) = 0.6547
	Controlled QTL2 = 0.62 / (6.867/0.456) = 0.0411